Creating the Observation Window

The SMRT™ Cell Provides the World's Smallest Detection Volume

Exploiting DNA polymerase as a sequencing engine requires single molecule detection. DNA polymerization is a stochastic process, where intervals between incorporation events typically vary. Thus a population of polymerases even acting on the same template would quickly become out of phase with each other.
Problem of background interference

Figure 1. Problem of background interference.

For proper functioning, DNA polymerase requires a high concentration of labeled nucleotides, which creates a fluorescent background thousands of times brighter than the signal of a single incorporation event.

Existing single molecule detection techniques are limited to low nanomolar concentrations to reduce the background fluorescence of other nucleotides in solution. At higher concentrations, hundreds or thousands of labeled molecules flood the detection volumes of these microscope systems (Figure 1). This creates a high background noise level, against which it is not possible to detect individual fluorophores. However, polymerases require this high concentration level, without which the speed, accuracy, and processivity of the enzyme all suffer.   1 | 2 | 3 | 4 next »

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